JanCeuleers: Your solution works!

My setup is similar to yours. I have a nVidia mainboard SATA controller
with the system disk and spare connected, and a Promise TX4 SATA PCI
card with four disks hosting a RAID5 volume. I added the modules sata_nv
and sata_promise to /etc/initramfs-tools/modules, rebuilt initrd,
rebooted, and now it works as intended.

Thank you for finding a solution. I hope the Ubuntu devs can find a way
to automate this or inform users about it.

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mdadm does not add spares to arrays on boot
https://bugs.launchpad.net/bugs/252365
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