OK, after talking with hyperair on #ubuntu-motu about this:
- uploaders.mk does actually change the debian/control.in to debian/control

- Commenting out (in debian/rules) DISABLE_UPDATE_UPLOADERS and removing the 
'-e "s...@gnome_team@#$(UPLOADERS)#g" \' part, then debian/rules attempts to 
change debian/control.in again, but doesn't change the @GNOME_TEAM@ (it 
basically overwrites the already changed debian/control).
(This could be easily fixed using sed -i -e 's/.../.../' debian/control)

- By using DISABLE_UPDATE_UPLOADERS we disable this, and give more power
to the maintainer to handle changes and @tags@ in debian/control.in

-- 
debian/control: Description shows duplicate lines
https://bugs.launchpad.net/bugs/339554
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