I have similar problem that i think may be related.

I can move the mouse pointer, but the local and remote pointers are
offset from each other. As i move my local mouse pointer off the bottom
of the vnc window, the remote pointer is still about 1/6th up the
screen.

I am on an Asus 901 with Jaunty Alpha running the same version of the
package as the original reporter.

Not sure if they are related. I have tried it using UltraVNC viewer
1.0.2 and TightVNC viewer 1.3.10 on WindowsXP.

Also noticed in the Xorg log posted that X is using the Synaptics mouse
driver. I am pretty sure mine is as well. Could there be an issue here?
(No idea how vino interacts with X so don't know if it is relevant).

-- 
vino: mouse cursor stays in upper left corner
https://bugs.launchpad.net/bugs/337926
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