Thanks a lot for the log.
It is a bit mysterious what happend, even with the log. It looks like
the u-m thought that it was able to do a update from your mirror, but
the Packages files that it got were empty. If you could add the content
of /var/lib/apt/lists ads well, that would be most appreciated. I added
extra paranoia code to ensure this does not happen anymore to the
obsoletes calculation and extra care to the update code. This should
hopefully fix the problem. Still, the contents of /var/lib/apt/lists
will be helpful to diagnose it further.
Thanks,
Michael
** Changed in: update-manager (Ubuntu)
Status: Incomplete => In Progress
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unreliable network connection can cause update-manager to delete whole system
https://bugs.launchpad.net/bugs/335154
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