I tried the Ubuntu Eclipse version a while ago. There was the problem that the 
CVS did't work with extssh. So i had to switch to an downloaded eclipse from 
eclipse.org.
The reason why i thought this is a ubuntu bug is because it happens with 
different JVM (including the Ubuntu packages). Eclipse exits with an JVM error. 
 
A friend of mine is running Ubuntu LTS 6.06 on a 32 bit machine and has no 
problems with an eclipse from eclipse.org.

If it would be a Eclipse or JVM problem would that happen with different
JVM's, Eclipse versions?

It's may a GTK Problem. Look at the attached dump file

** Attachment added: "Blacdown JVM Dump"
   http://librarian.launchpad.net/5571290/hs_err_pid8047.log

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eclipse 3.1 / 3.2 JVM Crashes 
https://launchpad.net/bugs/77393

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