Sorry, but I have to confirm the "bug".

"...the emacs-extra package turn on zone mode..." (not emacs-common
itself) : true.

but uninstalling emacs-extra is NOT a solution! emacs-extra is otherwise full 
of good things, as one can read from the many features enabled by
/usr/share/emacs/site-lisp/emacs-extra/emacs-extra.el

and, no, turning zone on is not done in the user's .emacs file, which is almost 
empty after install, but in the system customizations, more precisely in the 
file above. Actually, references to "zone" customizations, after removing the 
unrelated "time-zone" things, are disseminated  everywhere! 
(do   grep "zone" /usr/share/emacs*/*/*/*.el | grep -v "time"   to see this...)

To conclude, that's the lines
--------
(when (>= emacs-major-version 21)
[...]
  (require 'zone)
  (setq zone-idle 300)
  (zone-when-idle 300))
--------
in /usr/share/emacs/site-lisp/emacs-extra/emacs-extra.el
which cause the automatic loading of zone. One needs to cut them out at every 
reinstallation.
I confirm that I needed to do it just today, after a fresh Ubuntu dist-upgrade 
(to emacs22)
No telling, in a poll if one should remove these lines in the 'standard'  
emacs-extra.el  file, I vote 'yes', for the reasons very well described by Tim 
Jones in his posts, and because zone is just not useful.

PS: I suspect a bug in zone itself. It looks like, if zone is up and
running while the system is awake, it takes small resources, but if it
is working while screensaver is on, then it takes much more resources...
I don't know, but it looks like zone relyes on the pauses for drawing to
screen, and, if not occurring because of screensaver, it takes much more
cpu.

-- 
Emacs 'zone', should NOT be enabled by default.
https://bugs.launchpad.net/bugs/101905
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