Okay, it was the CF card itself, not the format method.  Formatting the
new card in the Microtrack doesn't change anything, it still mounts
fine.  The old card, it seems, has a problem with Ubuntu, or maybe
reformatting it will help?  Right now I have data on it, but once I find
a card reader to transfer it to my desktop I'll try that and see whether
it was simply a bug in the formatting process (my guess is the card is
just incompatible...)

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USB devices not registering, and other: "device not accepting address" or 
"device descriptor read/64, error " issues on ubuntu, mint 4.0 and debian etch
https://bugs.launchpad.net/bugs/178601
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