Running the following PyGTK program in metacity, compiz_ubuntu5 and 
compiz_ubuntu6 shows the behaviour has reverted to opening in the background as 
expected:
<snip>
import gtk
w = gtk.Window()
w.set_focus_on_map(False)
w.show()
gtk.main()
</snip>

I can't give 100% certainty other behaviour is correct as compiz does
not run well on my hardware.  It behaves as a window manager so I'd say
tested.

-- 
With focus_on_map = FALSE, window still opens in front
https://bugs.launchpad.net/bugs/333284
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