Yes, I've had this happen a few times too... it seems to help immensely
by running "kdeinit" and letting that finish before launching a
ktorrent.
Also, the use of Xgl or any kind of compositing window manager seems to
make it worse, too.
I'll relay this upstream too.
** Changed in: ktorrent (Ubuntu)
Status: Unconfirmed => Confirmed
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KTorrent tray sometimes ends up in weird places
https://launchpad.net/bugs/78188
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