Same problem. Upgraded from 8.10 to 9.04 release. Not wubi installed.
~/.profile:
if [ -d "$HOME/lib" ] ; then
export LIBRARY_PATH="$HOME/lib"
export LD_LIBRARY_PATH="$HOME/lib"
fi
when logging in on tty1 LD_LIBRARY_PATH is set. In gnome it is not set.
Perhaps sourcing .profile in /etc/gdm/Xsession destroys it. Its the only place
I could find that the varible is set during gdm login.
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LD_LIBRARY_PATH not loads from .profile
https://bugs.launchpad.net/bugs/366728
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