I'd call it stuttering rather than crackling, but I'm getting similar on
a fresh Jaunty install.

for each stutter, pulseaudio debug gives:
  I: module-alsa-sink.c: Underrun!
  D: protocol-native.c: Requesting rewind due to end of underrun.

Fiddling with the settings in /etc/pulse/daemon.conf has not been successful.
I've tried various number for default-fragments and default-fragment-size-msec.

I've tried setting high-priority = yes, realtime-scheduling = yes, and
resample-method = trivial (and others)

I still get underruns (which sounds like stutters) when I'm changing
windows, scrolling, etc., particularly if I'm running something even
slightly CPU intensive (such as montage).

Using on-board audio: nVidia MCP51 High Definition Audio (rev a2) via
snd-hda-intel module.

-- 
Crackling noise after update to pulseaudio
https://bugs.launchpad.net/bugs/301755
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