Well that was indeed the problem. Once the custom kernel was running,
with the CPU frequency throttling simply and basically turned on, there
was no more problem. The low frequency and power saving governors ran
perfectly.

On the other hand I had no more Wi-Fi. 'Going to try to solve that one
now.


** Attachment added: "Kernel misconfigured!"
   
http://launchpadlibrarian.net/26430190/Screenshot-Linux%20Kernel%20v2.6.28.9%20Configuration%202.png

-- 
cpu frequency scaling monitor does not change frequency in Ubuntu Jaunty (9.04) 
alpha 5 on Core 2 system
https://bugs.launchpad.net/bugs/337780
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