Nice to hear that! If compiz and glxgears influences your frame rate and
burnP6 with lower prio does not, then it is most likely a problem with
3D graphics. It's strange that changing up_threshold does make a
difference. But IMHO this points to a race condition in the video
driver.

In Jaunty the ATI, Intel and I think also Nvidia drivers are under heavy
development. Perhaps you find a solution in a radeon/intel/nouveau bug
or you could help by filing a new bug with your observations. If you do
further experiments with process priorities (= nice values) then first
disable "ignore_nice_load" (see
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/107545/comments/22).
Otherwise the results are too complicated to interpret.

-- 
CPU Scaling too aggressive
https://bugs.launchpad.net/bugs/107545
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