Hi Hulky,
It sounds like there might be a problem with the pidgin-ppa.list file.
Can you try removing it from that directory and then try a normal update
and see if it synaptic works without that file present?
** Changed in: update-manager (Ubuntu)
Status: New => Incomplete
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Update-Manager refuses to update after my wrong command to update Pidgin
https://bugs.launchpad.net/bugs/385828
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