Here's a patch that'll disable the feature entirely.

At the end I don't know what this portion is in the patch or if it's needed.
--- libwnck-2.26.0.orig/libwnck/tasklist.loT
+++ libwnck-2.26.0/libwnck/tasklist.loT

** Attachment added: "debdiff karmic"
   http://launchpadlibrarian.net/27847879/libwnck_2.26.0-0ubuntu2.debdiff

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Offer option to disable scroll wheel on task list
https://bugs.launchpad.net/bugs/39328
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