Try adding "reboot=pci" to the kernel command line.  That fixed the
issue for me.  I'm running 2.6.30-gentoo-r1 (x86_64) on a late 2008
MacBook Pro.  Yes, I know it's not an Ubuntu kernel, but you guys appear
to be the only folks on the planet with an actual bug filed about this!

In my testing, reboot=kbd (the default) did not work, nor did
reboot=acpi, or reboot=efi.  I didn't try reboot=triple since a triple-
fault reset seems like an ugly way to recycle the system.  reboot=bios
might be another option if you're running 32-bit.

-- 
[Jaunty] MacBook 5.1 will not reboot (Restart).
https://bugs.launchpad.net/bugs/338083
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