I seem to be having the same problem, confirmed in Jaunty. However...
I'm not on 64 bit, I'm on the PowerPC-build, so I suspect this is a
multi-arch bug (something in OpenJDK itself) rather than specifically a
64bit x86 issue.
** Changed in: openjdk-6 (Ubuntu)
Status: New => Confirmed
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Java Web start does not work on Ubuntu 8.04 64 bit (Firefox and Konqueror)
https://bugs.launchpad.net/bugs/252472
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