During our little coding camp in greece, this was one of the issues we looked 
into.
It turns out it is possible to use libnss as a PKCS11 provider, thereby making
the import of the specific certificate (and potential others in the future that 
want
to use the same algorithm) work.

The details are in
http://icedtea.classpath.org/bugzilla/show_bug.cgi?id=356

Since it only needs a new dependency openjdk -> libnss and a simple config file
this should be a viable solution.

There is already a patched version of openjdk in my ppa:
https://launchpad.net/~pktoss/+archive/ppa/

-- 
[Karmic] Update to ca-certificates 20090624 prevents ca-certificates-java from 
installing
https://bugs.launchpad.net/bugs/392104
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