Thanks for your report. Would you mind providing a following
informations?

Result of typing
$ ulimit -a
command in terminal.
Also when a issue occure agaid do the following:
$ lsof -p `pidof transmission` > /tmp/lsof.transmission
and attach created file (/tmp/lsof.transmission) to this report.

Best Regards,
Krzysztof Klimonda

** Changed in: transmission (Ubuntu)
   Importance: Undecided => Low

** Changed in: transmission (Ubuntu)
       Status: New => Incomplete

-- 
transmission: too many open files
https://bugs.launchpad.net/bugs/406486
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