Fixed in bogofilter's upstream Subversion repository. Relevant commit is
r6848. Unfortunately, it's non-trivial, so that revision may have to be
backported manually.
Thanks, Christian, for the test cases.
** Changed in: bogofilter
Status: Confirmed => Fix Committed
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Bogofilter seems to fail decoding base64
https://bugs.launchpad.net/bugs/320829
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