I just checked with the latest kernel (2.6.31-10) and I don' t see any problem
like you described.
I guess is just a problem on your particular machine (perhaps you still have an
old symlink from a previous kernel).
** Changed in: conky (Ubuntu)
Status: New => Incomplete
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Conky looks in the wrong sysfs dir for hwmon temperature info
https://bugs.launchpad.net/bugs/435571
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