Thanks for your bugreport.
This is a bug, it should just wait for the other app to exit and
remember the installed/removed apps. Is there a way to reproduce this
problem, i.e. can you give me step-by-step instructions how to trigger
the bug?
** Changed in: software-center (Ubuntu)
Status: New => Incomplete
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software-center lost software in progress when I use other programs with root
permissions
https://bugs.launchpad.net/bugs/438953
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