I have a similar problem:
Song change notifications from Rhythmbox, and new mail from Evolution, appear
too far down the screen - as if it's below a non-existent notification.
Volume change appears in the expected position, directly below the
panel.
System has a nVidia dual-head card running TwinView, glx, compiz:
07:00.0 VGA compatible controller [0300]: nVidia Corporation NV43GL [Quadro FX
550] [10de:014d] (rev a2)
Subsystem: nVidia Corporation Device [10de:0349]
** Attachment added: "Notification for new song too far down the screen"
http://launchpadlibrarian.net/33234694/notify-osd.png
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Dualheadsetup - invalid notification position
https://bugs.launchpad.net/bugs/370380
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