Thanks for the bugreport.
I can reproduce this now. It appears that upstart does refuses the connection
when reboot tries to ask for reboot.
>From the strace log:
connect(3, {sa_family=AF_FILE, path=@"/com/ubuntu/upstart"}, 22) = -1
ECONNREFUSED (Connection refused)
I attach the full log.
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fails to reboot during recent 9.04 -> 9.10 upgrades
https://bugs.launchpad.net/bugs/451556
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