Hi, i have the same Problem at the moment. If i run alacarte in terminal i get 
the IOError: [Errno 13] Permission denied: 
'/home/myuser/.config/menus/applications.menu' .
If i run alacarte as with sudo, it starts correct but i am not able to add new 
items for example.

What can i do here?

Ubuntu 9.10 beta x86

Greetings

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alacarte crashed with IOError in save()
https://bugs.launchpad.net/bugs/404837
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