On Karmic, I have the same problem.
$ apt-cache policy beagle
beagle:
Installed: 0.3.9-3ubuntu1
Candidate: 0.3.9-3ubuntu1
Version table:
*** 0.3.9-3ubuntu1 0
500 http://nl.archive.ubuntu.com karmic/universe Packages
100 /var/lib/dpkg/status
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"beagle-search --icon" dies after leaving preferences dialog
https://bugs.launchpad.net/bugs/365340
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