I have had exactly the same problem (Karmic x86_64):

Update to 2.6.31-14-generic gave that same /dev/mem error message. I
booted off the old kernel and dpkg-reconfigured linux-
image-2.6.31-14-generic and that got it working again!? I have no idea
why it failed in the first place..

I am getting the EDAC warning on this kernel, and on 2.6.31-9-rt also.

-- 
EDAC amd64: WARNING: ECC is NOT currently enabled by the BIOS. Module will NOT 
be loaded.
https://bugs.launchpad.net/bugs/453034
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