Thanks for your bugreport.
This is indeed a bug in the current update-manager code (only affects
the non-partial upgrade case).
** Changed in: update-manager (Ubuntu)
Status: New => Confirmed
** Changed in: update-manager (Ubuntu)
Importance: Undecided => Medium
** Changed in: update-manager (Ubuntu)
Milestone: None => later
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update-manager doesn't mark new packages as auto-installed
https://bugs.launchpad.net/bugs/462035
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