Assuming gqview uses strcmp to sort filename lists you might be able to
LD_PRELOAD a modified strcmp to give a more natural sort order.

strnatcmp() looks like it might do what you want:
http://sourcefrog.net/projects/natsort/strnatcmp.c

More information:
http://www.codinghorror.com/blog/archives/001018.html

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GQView cannot view images in sequence properly 
https://bugs.launchpad.net/bugs/331384
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