I still don't understand. :)

Transmission doesn't have any way to move all the torrents at once...
you can move them one at a time with the "Set Location" feature, but it
doesn't sound like that's what you're talking about here.

Do you know how the files got moved?

-- 
Tramsmission broke and lost all my torrents (data)
https://bugs.launchpad.net/bugs/479351
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