I have resolved the problem.  The last kernel update appended "acpi=off"
in my grub menu.lst.  This disabled acpi and proper poweroff.  Deleting
this kernel parameter fixed things.

If there is a bug to address, it is in the scripts that update menu.lst
when a new kernel is installed.

My original menu.lst: menu.lst~
kernel      /boot/vmlinuz-2.6.17-10-generic root=/dev/hda1 ro quiet nosplash

Post update menu.lst: menu.lst
kernel      /boot/vmlinuz-2.6.17-11-generic root=/dev/hda1 ro quiet splash 
acpi=off

-- 
latest kernel upgrade broke acpi and power off on MSI Neo4
https://launchpad.net/bugs/87251

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