This bug was fixed in the package euca2ools - 1.0+bzr20091007-0ubuntu1.1

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euca2ools (1.0+bzr20091007-0ubuntu1.1) karmic-proposed; urgency=low

  * Do not base64 encode user-data in euca-run-instances, as boto takes
    care of that (LP: #461156)
 -- Scott Moser <[email protected]>   Mon, 26 Oct 2009 20:38:04 -0400

** Changed in: euca2ools (Ubuntu Karmic)
       Status: Fix Committed => Fix Released

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User data is not parsed correctly by Eucalyptus in some cases
https://bugs.launchpad.net/bugs/461156
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