> Are you currently able to make a disk with two FAT32 partitions (say
sdb1 and sdb2) and install ubuntu onto sdb2 using usb-creator?

Yes, that's exactly how I'm doing it now. With the caveats that...

1. The two partitions have to be created by hand (using e.g. fdisk(8));

2. usb-creator won't play along if the disk geometry is off, so
sometimes it is necessary to have usb-creator format the disk first (to
set the geometry it wants), then repartition, and then install onto one
of the partitions.

-- 
usb-creator operates on mounted filesystems, does not display confirmation 
dialogs, issue warnings about data loss
https://bugs.launchpad.net/bugs/445810
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