The weave bug seems to be still present in scipy 0.7.1
I am running Ubuntu 9.10 (Karmic) and have scipy installed from source
(since it is not in the repos) without problems, the required Atlas, ...
libraries were installed using synaptic
ipython:
In [2]: scipy.__version__
Out[2]: '0.7.1'
Running a weave.blitz test routine:
"...
weave.inline(code, vars, type_converters = weave.converters.blitz)
..."
Output is:
starting weavefunc..
In file included from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.cpp:11:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In
static member function ‘static long int blitz::_bz_abs<long int>::apply(long
int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45:
error: ‘labs’ is not a member of ‘std’
In file included from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.cpp:11:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In
static member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503:
error: call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long
double)
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In
static member function ‘static long int blitz::Fn_abs<long int>::apply(long
int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524:
error: ‘labs’ is not a member of ‘std’
In file included from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/applics.h:394,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecexpr.h:26,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.cc:16,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vecpick.h:287,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/vector.h:443,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/tinyvec.h:424,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:38,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.cpp:11:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h: In
static member function ‘static long int blitz::_bz_abs<long int>::apply(long
int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/mathfunc.h:45:
error: ‘labs’ is not a member of ‘std’
In file included from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/funcs.h:23,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/newet.h:23,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array/et.h:21,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array-impl.h:2509,
from
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/array.h:26,
from
/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.cpp:11:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In
static member function ‘static int blitz::Fn_abs<int>::apply(int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:503:
error: call of overloaded ‘abs(int&)’ is ambiguous
/usr/include/c++/4.4/cmath:94: note: candidates are: double std::abs(double)
/usr/include/c++/4.4/cmath:98: note: float std::abs(float)
/usr/include/c++/4.4/cmath:102: note: long double std::abs(long
double)
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h: In
static member function ‘static long int blitz::Fn_abs<long int>::apply(long
int)’:
/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz/blitz/funcs.h:524:
error: ‘labs’ is not a member of ‘std’
Traceback (most recent call last):
File "weavetestsingle.py", line 22, in <module>
weave.inline(code, vars, type_converters = weave.converters.blitz, compiler
= 'gcc', extra_compile_args = ["-O3"])
File "/usr/local/lib/python2.6/dist-packages/scipy/weave/inline_tools.py",
line 335, in inline
**kw)
File "/usr/local/lib/python2.6/dist-packages/scipy/weave/inline_tools.py",
line 462, in compile_function
verbose=verbose, **kw)
File "/usr/local/lib/python2.6/dist-packages/scipy/weave/ext_tools.py", line
365, in compile
verbose = verbose, **kw)
File "/usr/local/lib/python2.6/dist-packages/scipy/weave/build_tools.py",
line 272, in build_extension
setup(name = module_name, ext_modules = [ext],verbose=verb)
File "/usr/local/lib/python2.6/dist-packages/numpy/distutils/core.py", line
186, in setup
return old_setup(**new_attr)
File "/usr/lib/python2.6/distutils/core.py", line 169, in setup
raise SystemExit, "error: " + str(msg)
scipy.weave.build_tools.CompileError: error: Command "g++ -pthread
-fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -fPIC
-I/usr/local/lib/python2.6/dist-packages/scipy/weave
-I/usr/local/lib/python2.6/dist-packages/scipy/weave/scxx
-I/usr/local/lib/python2.6/dist-packages/scipy/weave/blitz
-I/usr/local/lib/python2.6/dist-packages/numpy/core/include
-I/usr/include/python2.6 -c
/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.cpp -o
/tmp/jakob/python26_intermediate/compiler_71e584768071aa3498d8ed2c780a199b/home/jakob/.python26_compiled/sc_6211de8cbbdd4538661eae1a48c2a9890.o
-O3" failed with exit status 1
--
scipy.weave.inline compilation fails with gcc 4.3
https://bugs.launchpad.net/bugs/302649
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