I have this same issue; however, not caused by an upgrade to 9.10. Mine
is a fresh install of 9.10 (32bit), fully updated, to which I have added
several packages (work laptop rebuilt over the past 3 days).

Aptitude now wants to remove 100 packages (all listed with "{u}" after
their name), while apt-get does not wish to remove anything.

I do not wish to remove the applications, so why is Aptitude trying to
get me to remove them?

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After upgrade to Ubuntu 9.10, Aptitude is not usable - because it tries each 
time to remove many programs with no apparent reason (but all is ok in apt-get)
https://bugs.launchpad.net/bugs/477468
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