Under Preferences > Speed, you can set the global speed limits.
Under Torrent > Preferences, you get a dialog with the torrent's name in
the titlebar, and an Options tab that gives you a checkbox "[x] Honor
global limits".
What is the source of confusion? This seems straightforward.
** Changed in: transmission (Ubuntu)
Status: Confirmed => Incomplete
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Transmission bit-torrent doesn't honor speed limitation preferences
https://bugs.launchpad.net/bugs/460733
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