Looks like the config file was moved a while back but apparmour hasn't
been updated

ntp (1:4.2.4p6+dfsg-2) unstable; urgency=medium

  * Fixed typo in ntpdate man page (closes: #526086)
  * Updated standards version
  * Moved .dhcp version of configuration files to /var/lib/ntp and 
    /var/lib/ntpdate (closes: #524035)
  * Cleaned up man pages to satisfy lintian's hyphen-used-as-minus-sign
    complaint
  * Fixed limited buffer overflow in ntpq (CVE-2009-0159) (closes: #525373)
  * Fixed stack buffer overflow in ntpd (CVE-2009-1252) (closes: #525373)
  * Use new status_of_proc function to report status in ntp init script
  * Updated the config.guess/sub handling as recommended by autotools-dev to
    not clutter the diff, added autotools-dev to build dependencies


** CVE added: http://www.cve.mitre.org/cgi-
bin/cvename.cgi?name=2009-0159

** CVE added: http://www.cve.mitre.org/cgi-
bin/cvename.cgi?name=2009-1252

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ntpd apparmor rule does not allow reading dhcp based config
https://bugs.launchpad.net/bugs/517701
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