Looks like this was something specific to my system: I had two console-
kit-daemon executables, one in /usr/local/sbin and one in /usr/sbin. I
removed the one in /usr/local  (together with ck-list-sessions etc) and
now things are almost working.

However, console-kit-daemon does not start on boot. I found some error
messages in /var/log/:0-slave.log:

gdm-simple-slave[916]: WARNING: Unable to open session: Cannot launch
daemon, file not found or permissions invalid

gdm-simple-slave[916]: WARNING: unable to determine if seat can activate
sessions: Cannot launch daemon, file not found or permissions invalid

which I suspect are related. I can start console-kit-daemon myself (with
sudo) in the terminal, though.

I will reinstall gdm and gdm-session-bin to see whether that fixed the
problem...

-- 
[Karmic] Shutdown/restart from gnome menu does not work
https://bugs.launchpad.net/bugs/501294
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