I think I ran into that same bug... when putting parted into sector mode
it allowed me to create a logical partition starting on the sector
immediately following the EBR of the extended partition, but the second
sector is also consumed by the device node that is created for the
extended partition itself.  I can find no reason for this second sector
to be reserved.  It seems like it is a bug in the kernel partition table
code that parted picked up trying to do the same thing that BLKRRPART
does.  Subsequent logical partitions appear to only have the single EBR
sector, then immediately begin the logical partition just fine.

I'll take a look at the version you uploaded and see about making a few
minor changes already suggested by upstream.

-- 
Regression: Unable to add a partition to a disk that has another partition in 
use
https://bugs.launchpad.net/bugs/540940
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