See also: http://www.backports.ubuntuforums.org/showthread.php?t=760018
and http://ubuntuforums.org/showthread.php?t=622843

Lots of confirmation about the lack of visual prompt ... I suppose that
people haven't noticed the Window List entry for the prompt window,
which isn't otherwise presented.

As best I understand it, the problem is with gksu(do).

** Also affects: gksu (Ubuntu)
   Importance: Undecided
       Status: New

-- 
fprint: GKSU and GDM aren't asking to swipe the finger over the reader
https://bugs.launchpad.net/bugs/347778
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