That seems to be mere happenstance.  Using ext3 vs ext4 likely just
slightly alters the exact IO pattern to cause a different number of md
events.  As long as the md event counter is not the same then adding the
second modified disk back in causes a resync, destroying the changes
specific to the second disk and going with the changes on the first
detected disk.

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booting out of sync RAID1 array fails with ext3 (comes up as already in sync)
https://bugs.launchpad.net/bugs/557429
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