I started having this problem like 6 months ago when I was using Xubuntu
9.10. Short of restarting the Xserver nothing would fix it. I tried
removing all my configuration files and starting clean but it still came
back so i gave up on Xfce thinking it was the problem and installed
Kubuntu 10.04 and I have it happening regularly in KDE even on the first
boot. It seems like the problem might be related to the window managers
because it seems like dragging or un/maximizing the windows with a
double click sometimes triggers it.

I use google chrome with gmail open most of the time, and a logitech mx
laser mouse. but I have plugged in other mice when experiencing the
symptoms and they didn't work either. FWIW I am using an nvidia 6600
video card with the nvidia proprietary drivers and a twinview dual
monitor setup too. Is there any other trouble shooting info I can post?
It happens pretty regularly for me.

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Mouse clicks stop working sporadically
https://bugs.launchpad.net/bugs/41301
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