I had a similar issue, only that it also applied to ssh for me.

can you try to edit /etc/nsswitch.conf
to have
group:          compat nis
(instead of just "group:          compat")

and check if you have in /etc/group a line containing
+:::

-- 
gdm does not obey NIS settings for user groups
https://bugs.launchpad.net/bugs/553142
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