Actually, It seems to be working now.

I don't know if this is related, but today when I logged in, I noticed
my home directory changed to /home/likewise-open/DOMAIN/myusername, when
it used to be  /home/DOMAIN/myusername. Apparently, one of the upgrades
(karmic->lucid, partial upgrade) changed this, and the gdm login only
picked it up now after caches expired. Maybe ssh was breaking because of
this mismatch? This is, of course, a bug, as the home directory location
changed and the files weren't moved, I just got an empty home. After
fixing it with lw-edit-reg, clearing the cache, rebooting, waiting for
the cisco router to bring up the connection and for likewise to notice
the DC was up, I managed to login and got the home directory back. SSH
works now.

I have etckeeper running, and can provide configuration changes during
the upgrade. Should I file a separate bug?

Currently I get:
domain\myusern...@client:/etc$ getent passwd 1015036139
DOMAIN\myusername:x:1015036139:1015022081:LEON David 
Z:/home/DOMAIN/myusername:/bin/bash
domain\myusern...@client:/etc$ id
uid=1015036139(DOMAIN\myusername) gid=1015022081(DOMAIN\domain^users) 
groups=121(admin),1015022081(DOMAIN\domain^users)

-- 
Can't login with domain account via ssh in Lucid
https://bugs.launchpad.net/bugs/567473
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