I had this same problem. I checked into it and it turned out it was
because I had been running emerald before I upgraded and the old emerald
config's were lying around in my home folder, but I didn't reinstall
emerald. So it tried to start it each time it booted.

I removed it from my startup programs list and added this: "compiz
--replace" in its place.

This'll work if you're only using gnome. If you have KDE (or other),
you'll need to have it check to see if you're running gnome or KDE and
start compiz only if you're using gnome.

I wrote a simple script to do this (attached).


** Attachment added: "Detects session manager (Gnome, KDE, Xfce, etc) and 
starts compiz only if Gnome is running."
   http://launchpadlibrarian.net/47318392/start.sh

-- 
Must reenable desktop effects with every restart in ubuntu 10.04 lucid
https://bugs.launchpad.net/bugs/563161
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