This is because the site implements it wrong:
"<link rel="icon" type="image/x-icon" href="/favicon.ico" />"
should be
"<link rel='shortcut icon' href="/favicon.ico" />"
Other browsers might show it because they try harder to find favicons at
website's root, but you should open a new bug for that.
** Changed in: epiphany-browser (Ubuntu)
Status: Confirmed => Fix Released
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epiphany doesn't show favicon any more (some sites only)
https://bugs.launchpad.net/bugs/355755
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