I have reported a similar bug on 
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/587859

I've just upgraded from ubuntu 8.10 to ubuntu 10.04 (8.10 -> 9.04 -> 9.10 -> 
10.04)
and the bug appeared on all of them and in ubuntu upstream kernel.

Last logs:

Jun  3 19:00:07 lml kernel: [105220.860043] ata1.00: qc timeout (cmd 0xa0)
Jun  3 19:00:07 lml kernel: [105220.860054] ata1.00: exception Emask 0x0 SAct 
0x0 SErr 0x0 action 0x6 frozen
Jun  3 19:00:07 lml kernel: [105220.860060] sr 0:0:0:0: CDB: Test Unit Ready: 
00 00 00 00 00 00
Jun  3 19:00:07 lml kernel: [105220.860074] ata1.00: cmd 
a0/00:00:00:00:00/00:00:00:00:00/a0 tag 0
Jun  3 19:00:07 lml kernel: [105220.860076]          res 
51/20:03:00:00:00/00:00:00:00:00/a0 Emask 0x5 (timeout)
Jun  3 19:00:07 lml kernel: [105220.860080] ata1.00: status: { DRDY ERR }
Jun  3 19:00:12 lml kernel: [105225.900027] ata1: link is slow to respond, 
please be patient (ready=0)
Jun  3 19:00:17 lml kernel: [105230.884026] ata1: device not ready (errno=-16), 
forcing hardreset
Jun  3 19:00:17 lml kernel: [105230.884037] ata1: soft resetting link
Jun  3 19:00:17 lml kernel: [105231.048481] ata1: nv_mode_filter: 
0x739f&0x739f->0x739f, BIOS=0x7000 (0xc0000000) ACPI=0x701f (60:900:0x11)
Jun  3 19:00:17 lml kernel: [105231.064367] ata1.00: configured for UDMA/33

You can find more logs in 
http://lml.ls.fi.upm.es/pipermail/lml-adm/

-- 
Hitachi hard drive HTS541616J9SA00 requires NCQ blacklisting
https://bugs.launchpad.net/bugs/120839
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