here is an enhanced script (no need to stop daemon to be sure that it
works)

************************************************
#!/bin/sh
#
# Fancontrol start script.
#

set -e

# Defaults
DAEMON=/usr/sbin/fancontrol
PIDFILE=/var/run/fancontrol.pid
PATH=/sbin:/bin:/usr/sbin:/usr/bin


test -f $DAEMON || exit 0

. /lib/lsb/init-functions


case "$1" in
        start)
                cp /etc/fancontrol1 /etc/fancontrol
                log_begin_msg "Starting fancontrol config 1..."
                start-stop-daemon --start -b -p $PIDFILE -x $DAEMON
                log_end_msg $?
                sleep 1
                if [ ! -f  $PIDFILE ]
                then
                log_success_msg "Erreur de configuration"
                else
                log_success_msg "Démarrage ok"
                exit 0
                fi

                cp /etc/fancontrol2 /etc/fancontrol
                log_begin_msg "Starting fancontrol config 2..."
                start-stop-daemon --start -b -p $PIDFILE -x $DAEMON
                log_end_msg $?
                sleep 1
                if [ ! -f  $PIDFILE ]
                then
                log_success_msg "Erreur de configuration"
                else
                log_success_msg "Démarrage ok"
                exit 0
                fi

                cp /etc/fancontrol3 /etc/fancontrol
                log_begin_msg "Starting fancontrol config 3..."
                start-stop-daemon --start -b -p $PIDFILE -x $DAEMON
                log_end_msg $?
                sleep 1
                if [ ! -f  $PIDFILE ]
                then
                log_success_msg "Erreur de configuration"
                else
                log_success_msg "Démarrage ok"
                exit 0
                fi


                cp /etc/fancontrol4 /etc/fancontrol
                log_begin_msg "Starting fancontrol config 4..."
                start-stop-daemon --start -b -p $PIDFILE -x $DAEMON
                log_end_msg $?
                sleep 1
                if [ ! -f  $PIDFILE ]
                then
                log_success_msg "Erreur de configuration"
                else
                log_success_msg "Démarrage ok"
                exit 0
                fi

                ;;
        stop)
                log_begin_msg "Stopping fancontrol daemon..."
                start-stop-daemon --stop -o -q -p $PIDFILE
                log_end_msg $?
                rm -f $PIDFILE
                ;;
        force-reload|restart)
                sh $0 stop
                sh $0 start
                ;;
        *)
                log_success_msg "Usage: /etc/init.d/fancontrol 
{start|stop|restart|force-reload}"
                log_success_msg "  start - starts system-wide fancontrol 
service"
                log_success_msg "  stop  - stops system-wide fancontrol service"
                log_success_msg "  restart, force-reload - starts a new 
system-wide fancontrol service"
                exit 1
                ;;
esac

exit 0
********************************************************

-- 
Fancontrol relies on the module load order
https://bugs.launchpad.net/bugs/576602
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