As Serge mentioned, you have chosen a datadir that is site-specific,
uncommon and different from the default on Ubuntu. You can configure
AppArmor for your environment in the /etc/apparmor.d/usr.sbin.mysqld
profile. Feel free to see https://wiki.ubuntu.com/DebuggingAppArmor for
more information.
** Changed in: mysql-dfsg-5.1 (Ubuntu)
Status: Confirmed => Won't Fix
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[lucid] MySQL fails to install db (mysql_install_db) in specified directory due
to AppArmor
https://bugs.launchpad.net/bugs/597490
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