I am having the same 2-second delay when I run sox (with pulseaudio) on
a small file:

  /usr/bin/play /usr/lib/openoffice/basis3.2/share/gallery/sounds/ok.wav

I posted more info here:

  https://bugs.launchpad.net/ubuntu/+source/sox/+bug/591003

when I reported it as a sox bug, though it's pulseaudio.
(When I kill pulseaudio, the problem goes away).

Attached is a pulseadio log.  The delay seems to start at the point in
the log when the following is printed:

D: protocol-native.c: Underrun on 'ALSA Playback', 0 bytes in queue.
D: sink-input.c: Requesting rewind due to corking
D: module-suspend-on-idle.c: Sink alsa_output.pci-0000_00_1b.0.analog-stereo 
becomes idle, timeout in 5 seconds.


** Attachment added: "2 second delay after playing small wav file"
   http://launchpadlibrarian.net/51181328/pulseverbose.log

-- 
Ubuntu Lucid / PulseAudio Alsa-Plugin : 2 sec delay
https://bugs.launchpad.net/bugs/582600
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